rs29139083 SNP Detail

Summary

• ID
  rs29139083
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26495672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGAAAAGCA AGGTAGAAAT AAGTATGCTT CCATATGGTT
  TATCCTGTAA AACTCAATGG AGGGTATCCT ATCAAAAGTA TTTCCGACAT CCCAAGCATG
  K
  TCTATGTTTA CTGAGATCTA AAATCAGATT CCATGCCCAA CTCACATGAC GAACACCCAT
  GCCGAGGGTG ACTTGAACAT TTGTAGGGGC CGAGTGTCA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38911039	mCV24521335	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	T
ss137439021	ENSMUSSNP7068269	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		T
ss323950905	CHEV_12_27130538	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29139083					SNP	G	G	G	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26495672 () rs orientation: forward

Symbol	Name	Function Class
Rr464136	regulatory region 464136	1284 bp distal
Rr464137	regulatory region 464137	702 bp proximal
Rsad2	radical S-adenosyl methionine domain containing 2	within coordinates
Tssr112998	transcription start site region 112998	1920 bp downstream
Tssr112999	transcription start site region 112999	1855 bp downstream
Tssr113000	transcription start site region 113000	1754 bp downstream
Tssr113001	transcription start site region 113001	1267 bp downstream
Tssr113002	transcription start site region 113002	1243 bp downstream
Tssr113003	transcription start site region 113003	1155 bp downstream
Tssr113004	transcription start site region 113004	1104 bp downstream
Tssr113005	transcription start site region 113005	1095 bp downstream
Tssr113006	transcription start site region 113006	728 bp downstream
Tssr113007	transcription start site region 113007	638 bp downstream
Tssr113008	transcription start site region 113008	470 bp downstream
Tssr113009	transcription start site region 113009	455 bp downstream
Tssr113010	transcription start site region 113010	265 bp downstream
Tssr115907	transcription start site region 115907	1972 bp upstream
Tssr115908	transcription start site region 115908	1928 bp upstream
Tssr115909	transcription start site region 115909	1844 bp upstream
Tssr115910	transcription start site region 115910	1790 bp upstream
Tssr115911	transcription start site region 115911	1742 bp upstream
Tssr115912	transcription start site region 115912	1728 bp upstream
Tssr115913	transcription start site region 115913	1693 bp upstream
Tssr115914	transcription start site region 115914	1645 bp upstream
Tssr115915	transcription start site region 115915	1602 bp upstream
Tssr115916	transcription start site region 115916	1561 bp upstream
Tssr115917	transcription start site region 115917	1511 bp upstream
Tssr115918	transcription start site region 115918	1496 bp upstream
Tssr115919	transcription start site region 115919	1465 bp upstream
Tssr115920	transcription start site region 115920	1433 bp upstream
Tssr115921	transcription start site region 115921	1057 bp upstream
Tssr115922	transcription start site region 115922	1032 bp upstream
Tssr115923	transcription start site region 115923	939 bp upstream
Tssr115924	transcription start site region 115924	879 bp upstream
Tssr115925	transcription start site region 115925	864 bp upstream
Tssr115926	transcription start site region 115926	513 bp upstream
Tssr115927	transcription start site region 115927	472 bp upstream
Tssr115928	transcription start site region 115928	1499 bp downstream
Tssr115929	transcription start site region 115929	1529 bp downstream
Tssr115930	transcription start site region 115930	1805 bp downstream
Tssr115931	transcription start site region 115931	1843 bp downstream