rs29140863 SNP Detail

Summary

• ID
  rs29140863
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69622035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTCCACA GGTTTTGAGG
  TTCAGCCCCT CATTCTGGGC AGGACAGGCC ACTCTAACCA GAGCACTTCT CTTCCCTTCT
  CTCGCCCTCC CTGCTGGGAG GTAGTAGACA CGGGTTTCTT TATGGTGGTG ATTCTCAATT
  TAGGAAACAT TAAAGCTATT TGGAGTCCTT CAGTACCACC ACCACACCTC CTGTTTACTC
  Y
  GGCTAGAATG AAGCTTGACC TTAGCATAGT GCTTGGCTTC TGCTAGCTTC CAATTTTCCA
  AGTGACCACA CAGTCTGGTT GAAGAAACAG TCCCTACAAA GCTAGGAAGT TACAGGTTCT
  AGGACAGCTA GGGCTACACA GAGAAACTGT CTCCAAACAC CAAAACGAAA CAAAAATCCC
  CAAACTTAAA GCCAAAACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38913571	mCV22702764	ABI	CRAMUS_MOUSE	f	SNP		T	C				C		C
ss51017747	NES14400714	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C		C	C	C	C	C	C	C	C	T
ss137859523	ENSMUSSNP4101541	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29140863					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51017747	NES14400714	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69622035 () rs orientation: forward

Symbol	Name	Function Class
Rr257073	regulatory region 257073	1835 bp distal
Rr257074	regulatory region 257074	235 bp distal
Rr403327	regulatory region 403327	416 bp downstream