rs29141680 SNP Detail

Summary

• ID
  rs29141680
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:101845459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAAAAGTTGA TTTAGCTCCC CAGCCTTGCC CTTTTGGAAA AAAACAACTT TAGCTTTAAA
  GAATAATAGA TTTTCAAAAA GACATTTTCT TCATTAAATA ATTTTAAAAT ATAGTTAGCA
  GGAACAAAGG CAACAAAATC CAAAGACACT CTGAAAGACA TTGAAGGGCA TGTGACATCT
  AGATACGGTG TGGTGTCCTA CACTACCCAG CACCCTGCAG CAGCGACGAG TGGTGAGTAC
  TGTAGGACTC CAACAAGCTC GGGCTTCGGA TCCTGCTGCA ATGCAGCTTC ATTTAGCTGA
  R
  ATATGTGATA CTGGGATAAA TGGACCAGGT GGTGGTGGCG CACGCCTTTA ATCCCAGCAC
  TCGGGAGGCA GAGGCAGGCT CATCTCTGTG TGTTGAAGGT CAGCCTGGAC TACAGAACAA
  GTTCCAGGAC AGCCAGGGCT CCTCAGAGAA ACCCTGTCTT AAGTAGATGA AAATTCTCTT
  CACAATCTCT ACAACTTGTC TATAAACCCA AAGCTATGCT AAAAGAAGTG TTCATTAGAA
  ATGTTTTAAA AGGAGCCAGG TGTAAAGGTA CATACATGCC TTTAATCCAG TAGAGGCTGC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38916523	mCV22298715	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29141680					SNP	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101845459 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Trip11	thyroid hormone receptor interactor 11			Intron
				Noncoding-Transcript-Variant
Tssr117378	transcription start site region 117378			1338 bp downstream