rs29141984 SNP Detail

Summary

• ID
  rs29141984
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52655900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGGCCTT CAGGGGACCT
  CTCTGTAAGA AGCCAGTTTT GCTTCCTTTT GCACCTTCAT CTCAACATTC CTTTATTCTA
  CATAATTTTA AAAGTTCTCC TTTGAATTGG CTGTAGCATA TGTTTTTATT GTTTTCTACA
  TTACCTAAAA TCTCTGATAC ACGATACACG TTTCTCTTTT TAATCCACAG AAGAGGCATG
  K
  TTTTAATTAA AAAATAGTTT TATATAAGTT TGGAGTTCTT CCACTGAGTT TCCCAGTGGA
  CTCACCTAAC AAAGCTAAGT ATATTTATAG TCCGAGAAAG TACAGTTTAT GGTCTAATTA
  AAGCTCAGAT ACATTTTTCT TCATTTTTTC ATGACAATAG AAATTTGATG ACTTTTTCTT
  ATTGAAGTAC TCTCTGTTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38916911	mCV22548499	ABI	CRAMUS_MOUSE	f	SNP		G	T				G		G
ss52423901	NES15398977	PERLEGEN	MM_PANEL2	f	SNP	G			T	G	T		G	G	G	G	G	G	G	G
ss137738459	ENSMUSSNP4987958	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29141984					SNP	G	G	T	T	G	T	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52423901	NES15398977	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52655900 () rs orientation: forward

Symbol	Name	Function Class
Gm35239	predicted gene, 35239	within coordinates
Tssr113445	transcription start site region 113445	1474 bp downstream