rs29142786 SNP Detail

Summary

• ID
  rs29142786
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:61650062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTGCTTCGCT ATATGGAACT CATCAGGGAT AACACCATAT GACTAGAGGA TTCACAGGCC
  ACAGGAGAAA TCCACTACTA TTACTCAGAT AAATGGACAT AGTATTAAAC TGACTACTAA
  TGATTATCTC TGTATCCAAA AATTAGTGCC TCCATCAATA TTCATCTGAG AGATGAACAT
  TTACAAAAGA TGATAACACA TAGATCCACA ATGAGTCAAA TATCAAGAAA AAATTTTATA
  GTGTCTAGCC TTTATATATA TATATATATA TACACACACA CACACACACT ACACACACAC
  W
  TATGTGTGTG TGTGTAGTGT GTGTGTGTGT GTGTGTGTGT GAACAATGGT TGACTATGAT
  CAGAAAGTCC AAGAATCTAA TAGTTGCTCG CCATGTGAAG CTGGAATTCA GCTGCTCTTT
  AGTATATGCT CGAATCCTCA TATACTAAGA GTATATGCTC TTTAGTAAAT GCTGTAATGC
  CAGTGAAGGA ATGAACTTGC TAGCAAGGCA AGGACAAACT AGCAAATAGA AACAAACTTC
  CTCCTTCTAT GTCCTCATGT AGGCTACCAG CAGAAGATGT GGCCAAGACT AAAGCTGTAT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss38917736	mCV22338392	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
ss137815014	ENSMUSSNP4757371	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29142786					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:61650062 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lrfn5	leucine rich repeat and fibronectin type III domain containing 5			Intron
				Noncoding-Transcript-Variant
Tssr113582	transcription start site region 113582			604 bp upstream