rs29142831 SNP Detail

Summary

• ID
  rs29142831
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69622654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAT CTACCCTCTG CTTCAGGGCT
  M
  ACAGCAGCCG TCCTGCCCCA AGCCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38917686	mCV22702775	ABI	CRAMUS_MOUSE	f	SNP		A	C				A		C
ss51017743	NES14400665	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	C		C	C	C	C		C	C	C	C		A
ss137859529	ENSMUSSNP5316935	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C						C
ss324085224	CHEV_12_70676867	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29142831					SNP	A	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51017743	NES14400665	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69622654 () rs orientation: forward

Symbol	Name	Function Class
Rr257074	regulatory region 257074	854 bp distal
Rr403327	regulatory region 403327	1035 bp downstream
Vcpkmt	valosin containing protein lysine (K) methyltransferase	1748 bp downstream