rs29143009 SNP Detail

Summary

• ID
  rs29143009
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:32110876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCGA AGTTGACACC CTTACTGGGG
  R
  TGCCGCCCCC GGCGGCTGCG CCCGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss38918602	mCV22596108	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss137572527	ENSMUSSNP466829	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs29143009					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:32110876 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4539	CpG island 4539	within coordinates
Gm51992	predicted gene, 51992	1342 bp downstream
Gm60244	predicted gene, 60244	1844 bp upstream
Prkar2b	protein kinase, cAMP dependent regulatory, type II beta	within coordinates
Tssr113126	transcription start site region 113126	887 bp downstream
Tssr116073	transcription start site region 116073	67 bp downstream
Tssr116074	transcription start site region 116074	317 bp downstream
Tssr116075	transcription start site region 116075	344 bp downstream
Tssr116076	transcription start site region 116076	428 bp downstream