rs29143134 SNP Detail

Summary

• ID
  rs29143134
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:101848247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTGGCAAA AGAAGTCAAG CAATGCTGAA TCTGTGCCTA
  GCAGCACACA CACGCTCAAG AAGCAGAGGA TGGACTAGGA TGTAAGTCTG TGGCACACCA
  K
  GTTCAACCCC AGCACAGCCA AAAGAAAAAA TAAACTGTGG TTGAACAGTC GTTCTGCCTA
  TCATCTCCTT CCCAAATGTT TTCTACCAAA GTACAGAAC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38918632	mCV22298738	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T
ss138002642	ENSMUSSNP3055797	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29143134					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101848247 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Trip11	thyroid hormone receptor interactor 11			Intron
				Noncoding-Transcript-Variant
Tssr117378	transcription start site region 117378			1438 bp upstream