rs29143179 SNP Detail

Summary

• ID
  rs29143179
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52655630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACGTGCC AGATGGGGGA
  AGCTGTCATA GATGAACATC CTAAATTTCT TGTAGTAGCT CTAAGTTAAC CCATGGATAA
  ACTCATTTCC CCCCTTCTGT CTTGTTTCAA AGGATAGGTG ACCCTTGTGT ATGAAATATG
  TGTGGGTGTA AAGCTTCATT GTCTGGGATC CAATATCTAA GCCGAGGTCT ATGGCAGCTG
  Y
  TTTACAACTA TGTAAGTGTA GGTAAATGAC AGCAGGGCAA AGTAGTCTCT GTTACAGACT
  ACAGGCACTG CCTGGCCTTC AGGGGACCTC TCTGTAAGAA GCCAGTTTTG CTTCCTTTTG
  CACCTTCATC TCAACATTCC TTTATTCTAC ATAATTTTAA AAGTTCTCCT TTGAATTGGC
  TGTAGCATAT GTTTTTATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38918066	mCV22548512	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29143179					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52655630 () rs orientation: forward

Symbol	Name	Function Class
Gm35239	predicted gene, 35239	within coordinates
Tssr113445	transcription start site region 113445	1204 bp downstream