rs29143532 SNP Detail

Summary

• ID
  rs29143532
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110665926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACATATCC CCCCTCTCCT
  TATCTTTTTA TAAAACACAA CACCTTGTAA ATAGAGATTT AAAATAAGAA TGCTAAAAAT
  GAAAGGCTGA AGAGATGACT CAGCAGTTAA GAACCCTGGC TGCTCCTCCA GAGAACCCGG
  GTTCAAGTCC AGCACCCTAG ATGACAGCTG GAAGTCCCAG GGGTCTGACT CCAAGCATAC
  Y
  GCATGTACAC AGTACACAGC CATTCATTCA GGCAAACAGC TCTTCATAGA CAGAAAAATA
  AACTGAAACA AAAAAAAAAG TTAAAATGAA CCATGCTTAA GACCCAAGCA TCGGGACTGG
  AGAGATGGCT CAGTGGTTAA GAGCACTGAC TGCTCTTCTG AAGGTCCTGA GTTCAATTCC
  CAGAAACCAC ATGATGGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38924123	mCV24497739	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss138692767	ENSMUSSNP4036870	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29143532					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110665926 () rs orientation: forward

Symbol	Name	Function Class
Gm60092	predicted gene, 60092	within coordinates
Rr472970	regulatory region 472970	417 bp distal
Rr472971	regulatory region 472971	within coordinates
Rr472972	regulatory region 472972	221 bp proximal
Rr472973	regulatory region 472973	1176 bp proximal
Tssr115233	transcription start site region 115233	388 bp downstream