rs29143726 SNP Detail

Summary

• ID
  rs29143726
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:61649656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTGATATG CATGAAATTG GGAGAGAAAA GTGATTAATA
  ATTTGACACA TCTGTGGTCT CTGCTAGCTA CAATTATTTG GCTGACAAAA CATGTGTACT
  R
  GTACAACAGT GGTAAAAATA TTATGGAAGT AAACAAATCC TTTCTGATGG TATTCATGTA
  CTGCTTCGCT ATATGGAACT CATACTTTGG GCCATCATC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38919536	mCV22338403	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss137815011	ENSMUSSNP4001591	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29143726					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:61649656 () rs orientation: forward

Symbol	Name	Function Class
Lrfn5	leucine rich repeat and fibronectin type III domain containing 5	within coordinates
Tssr113582	transcription start site region 113582	1010 bp upstream