rs29143760 SNP Detail

Summary

• ID
  rs29143760
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110342593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAACAAGC CCCAGCGTGG
  GAAGGGAGGC GACACTTGAG CACCCACTGT GTGGCCAGCC CATCCAGGGT CTTAGGGTCC
  AAGTCATCTC TACCTCTTGT GCTTTAAAAA CAATTAATAT GCATTGTTAC TTTTCAAAGA
  AAAGGGGTGT GTGTGGGTGT GGGGGGGGGT GTTAAGCTAG GGTACCTTTT TCAACCTCCA
  S
  GTTAACAATG AAAGCAAGAT CCTAAATTCT GAGAGTGAGG AAAGAATTAG GGACCTAAGC
  CCCCTGCCAG TCTCCAGGCT CTAGGAAAGA CCAGCAGCTC CCCCACCAGG ATGCTCACGC
  TTTGGTGAGA GATGTTCTGT CTGCAGGGGC TAGAGGCTGC TGGAAGCCAG GTGCTGCTCA
  GGAGGTGGGG TTGGGGAGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38924937	mCV23148364	ABI	CRAMUS_MOUSE	f	SNP		G	C					G
ss47283063	NES11384289	PERLEGEN	MM_PANEL2	f	SNP	G		C	G	G	G	G		G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29143760					SNP	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47283063	NES11384289	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110342593 () rs orientation: forward

Symbol	Name	Function Class
Rr472874	regulatory region 472874	637 bp distal
Rr472875	regulatory region 472875	305 bp proximal
Rr472876	regulatory region 472876	588 bp proximal
Rr472877	regulatory region 472877	1635 bp proximal
Rr472878	regulatory region 472878	1699 bp proximal
Rr472879	regulatory region 472879	1779 bp proximal
Tssr115196	transcription start site region 115196	642 bp downstream