rs29143836 SNP Detail

Summary

• ID
  rs29143836
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69622750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAG ATACTGGCTT CCCCTTCAGC
  R
  GATGAGTTAC TCCTTAGGCC CTTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38921134	mCV22702787	ABI	CRAMUS_MOUSE	f	SNP		G	A		G		A
ss51017741	NES14400666	PERLEGEN	MM_PANEL2	f	SNP	G		A	A		A	A	A	A		A	A	A	A		G
ss137859532	ENSMUSSNP5580518	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A				A
ss324085225	CHEV_12_70676963	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29143836					SNP	G	G	A	A	G	A	A	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51017741	NES14400666	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69622750 () rs orientation: forward

Symbol	Name	Function Class
Rr257074	regulatory region 257074	950 bp distal
Rr403327	regulatory region 403327	1131 bp downstream
Vcpkmt	valosin containing protein lysine (K) methyltransferase	1652 bp downstream