rs29144143 SNP Detail

Summary

• ID
  rs29144143
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109710309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTA AATGCATGGA CTCTGTATGA
  Y
  GCTTGTCACC CCCTCTTCAC TGAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38919771	mCV24948041	ABI	CRAMUS_MOUSE	f	SNP	C	T			C
ss51052565	NES14374029	PERLEGEN	MM_PANEL2	f	SNP		T	C	T		C	C	C	C		C	C		T
ss138683853	ENSMUSSNP2282113	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss324156209	CHEV_12_110982085	CHEVERUD	SCREENING_POP	f	SNP										T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29144143					SNP	C	T	C	T	C	C	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052565	NES14374029	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109710309 () rs orientation: forward

Symbol	Name	Function Class
Gm54371	predicted gene, 54371	638 bp upstream
Mir369	microRNA 369	379 bp downstream
Mir409	microRNA 409	639 bp downstream
Mir410	microRNA 410	80 bp downstream
Mir412	microRNA 412	507 bp downstream
Mir541	microRNA 541	1377 bp downstream
Mirc7	microRNA cluster 7, including Mir382 through Mir3072	within coordinates
Mirc36	microRNA cluster 36, including Mir379 through Mir3072	within coordinates
Mirc46	microRNA cluster 46, including Mir409 through Mir410	80 bp distal
Mirg	miRNA containing gene	within coordinates
Rr472795	regulatory region 472795	1899 bp proximal
Tssr115184	transcription start site region 115184	86 bp downstream