rs29144281 SNP Detail

Summary

• ID
  rs29144281
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69817300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CACACACACA
  CGAATGCACG AGTGTCATTG CCTCTTTGTA GTGCCCGTTC TTGCTTTGTG ACCAATAACT
  ACCATTAGTG TCTGTTTTAT TATTGTTTAA TGATTTCTAA CATTGGCACT TAGCATCTTT
  TTTTTTCCAA ATAATATTTG ATAGTTGCTA CTTTCCTTGT TCTTATGGAA AAACACGGGA
  Y
  GAAAAGCAGT GTACAGGAAG AAGGATTTAT TTTGGCTTGC GGTTTGAAGG GATCCAGTCC
  ACAGTGGCAG GAGTATGATA TAGCTGACAC CATGGCAGTC AGAAAGCAGA GAATGTCACA
  AAAGGGGTCT GGGCAATAGA ACCTCAAGTC CTACCTCCAC TCACCTGTGA CCCACTCTCT
  CTTACAAGGC TCCAGTTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss38924165	mCV24219539	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss137860303	ENSMUSSNP5463527	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss324085550	CHEV_12_70871513	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs29144281					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69817300 () rs orientation: forward

Symbol	Name	Function Class
Cdkl1	cyclin dependent kinase like 1	within coordinates
Tssr116525	transcription start site region 116525	1219 bp upstream
Tssr116526	transcription start site region 116526	784 bp upstream