rs29144931 SNP Detail

Summary

• ID
  rs29144931
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:29581588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAT GTACCACGTT CAAAAAGGCA
  R
  TTATATCTGA GGAAATTATA TTTGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss38923605	mCV22619863	ABI	CRAMUS_MOUSE	f	SNP		A	A					G		A
ss61585714	NES17530649	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		A	A	A	A		G	A	A		A
ss137527429	ENSMUSSNP4659825	ENSEMBL	ENSEMBL_Sanger	f	SNP			A							A
ss323979698	CHEV_12_30216454	CHEVERUD	SCREENING_POP	f	SNP													A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs29144931					SNP	A	A	A	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61585714	NES17530649	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:29581588 () rs orientation: forward

Symbol	Name	Function Class
Gm20208	predicted gene, 20208	479 bp upstream
Myt1l	myelin transcription factor 1-like	within coordinates
Rr464423	regulatory region 464423	485 bp distal
Rr464424	regulatory region 464424	380 bp distal
Rr464425	regulatory region 464425	1311 bp proximal
Tssr113063	transcription start site region 113063	1691 bp upstream
Tssr113064	transcription start site region 113064	1703 bp upstream
Tssr113065	transcription start site region 113065	1762 bp upstream
Tssr113066	transcription start site region 113066	1839 bp upstream
Tssr113067	transcription start site region 113067	1862 bp upstream
Tssr113068	transcription start site region 113068	1888 bp upstream
Tssr116026	transcription start site region 116026	446 bp upstream