rs29145070 SNP Detail

Summary

• ID
  rs29145070
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52844519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAACCTTA CTAGGACACT
  AGGTTACTAC GTCAATGTTT AAGACAGGGA GGGAAAGAAG ATTCAGAGGA GAGAAGGGAG
  GAGGGAAGGG GTAAGAAAGG GAGAGAGAGG GGAGCACATG AGAAAAGGAT CAGTGTAAGT
  CAGAGAGCCC CATGCCACCG ATAGTTGCTC TTGGGAAGAT CTCAGCATGA TGGCAGAGCT
  R
  TGGCTGGAGG CAGCCCCAGC AGAATGTCAG CCCCCAATAG TGCCCTCCTA CGGCCGGCCT
  TAGGGAGCAT TGTGACTAGG ATCCAGAGAT AATTTATTCA GAGGAATCTT GGGGTGAGAG
  TAAACTAGAA GTTAGAGGAC ACTCCTTTGT ACTGCTCTCT CCAGTGCTGA TCTAGTGTGT
  GGCTTCCCTA AGTTGATACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38919629	mCV22517228	ABI	CRAMUS_MOUSE	f	SNP		G						A
ss52422104	NES15408961	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		A	A	A	A	G	A	A	G	A
ss137742217	ENSMUSSNP4469507	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29145070					SNP	G	G	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52422104	NES15408961	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52844519 () rs orientation: forward

Symbol	Name	Function Class
Akap6	A kinase anchor protein 6	within coordinates
Gm51971	predicted gene, 51971	within coordinates
Gm59837	predicted gene, 59837	1754 bp downstream
Rr466053	regulatory region 466053	949 bp distal
Rr466054	regulatory region 466054	1988 bp proximal