rs29145260 SNP Detail

Summary

• ID
  rs29145260
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8061925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCAGTCAT GACAGCACCA
  TTAGTTTAAC CAAGAAAAAC ATGGAAGCAT CAGTGAGAAC AACTGCCAAC CTCCATGCTC
  CCATATTCTC AATGAACTTC AAGCAGGAAC TTAATGGAAA TACCAAGTCA AAACCCACTG
  TTTCATCATC CATTGAACTA AACTATGACT TCAATTCCTC AAAGCTGCAC TCTACTGCAA
  M
  AGGAGGCATT GATCACAAGT TCAGCTTAGA AAGTCTCACT TCCTACTTTT CCATTGAGTC
  ATTCACCAAA GGAAATATCA AGAGTTCCTT CCTTTCTCAG GAATATTCAG GAAGTGTTGC
  CAATGAAGCC AATGTATATC TGAATTCCAA GGGTACTCGG TCTTCAGTGA GGCTACAAGG
  AGCTTCCAAA GTTGATGGTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38922820	mCV24183293	ABI	CRAMUS_MOUSE	f	SNP		C	A				C		C
ss50958135	NES14429028	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	C	A		A	C	C	C	A	A	A	A
ss137107642	ENSMUSSNP5096107	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29145260					SNP	C	C	A	A	C	A	C	A	C	C	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50958135	NES14429028	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8061925 () rs orientation: forward

Symbol	Name	Function Class
Apob	apolipoprotein B	within coordinates
Tssr112662	transcription start site region 112662	1864 bp downstream
Tssr112663	transcription start site region 112663	1623 bp downstream
Tssr112664	transcription start site region 112664	1599 bp downstream
Tssr112665	transcription start site region 112665	1444 bp downstream
Tssr112666	transcription start site region 112666	1424 bp downstream
Tssr112667	transcription start site region 112667	1375 bp downstream
Tssr112668	transcription start site region 112668	1239 bp downstream
Tssr112669	transcription start site region 112669	1152 bp downstream
Tssr112670	transcription start site region 112670	1096 bp downstream
Tssr112671	transcription start site region 112671	993 bp downstream
Tssr112672	transcription start site region 112672	411 bp downstream
Tssr112673	transcription start site region 112673	343 bp downstream
Tssr112674	transcription start site region 112674	268 bp downstream
Tssr112675	transcription start site region 112675	236 bp downstream
Tssr112676	transcription start site region 112676	140 bp downstream
Tssr112677	transcription start site region 112677	1 bp upstream
Tssr112678	transcription start site region 112678	125 bp upstream
Tssr112679	transcription start site region 112679	150 bp upstream
Tssr112680	transcription start site region 112680	169 bp upstream
Tssr112681	transcription start site region 112681	216 bp upstream
Tssr112682	transcription start site region 112682	229 bp upstream
Tssr112683	transcription start site region 112683	266 bp upstream
Tssr112684	transcription start site region 112684	310 bp upstream
Tssr112685	transcription start site region 112685	358 bp upstream
Tssr112686	transcription start site region 112686	406 bp upstream
Tssr112687	transcription start site region 112687	486 bp upstream
Tssr112688	transcription start site region 112688	587 bp upstream
Tssr112689	transcription start site region 112689	629 bp upstream
Tssr112690	transcription start site region 112690	654 bp upstream
Tssr112691	transcription start site region 112691	705 bp upstream
Tssr112692	transcription start site region 112692	741 bp upstream
Tssr112693	transcription start site region 112693	760 bp upstream
Tssr112694	transcription start site region 112694	898 bp upstream
Tssr112695	transcription start site region 112695	1117 bp upstream