rs29145587 SNP Detail

Summary

• ID
  rs29145587
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:33451517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAACTGTC GCCTTTGTTA
  GACAACAGTT TTCTCAAAGA CACATTATTT CCCATGGTTA GGCCAGCTTG CCTTGAAATT
  CAGCAGAATC TCAGCCTTGG CTGAGCCAGT TTGTAAATTC CAGCTTCACT TAAGGCTGCA
  GTGGCAGGGA TGCGCTCAGA AGCTGTGCGT CTTTCAGGAT CAGTGCAGAA CTGATGCAGG
  Y
  CCGAGAGATG CAGGCTTCTT CTACACTGTT TAGGAAGACA AGAAAGAAAA GGAGAGCCTC
  TCCTGCACCA TCCACCGGAT GATAATGACC TTTGGAGAGT CCAACAGCCA TCTTGACTAT
  CTGTGCATTT ACTATTTTGT TTTTTAAGTA GGCTGAGAGG ACCCGAGGTG TGTGGGCTTG
  ATAGACGATT CGTTAGTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38923637	mCV24566613	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		C
ss61592282	NES17542691	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		C	T	C	C	T	C	T	T	T
ss137584547	ENSMUSSNP1208478	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29145587					SNP	T	T	T	T	T	T	T	C	C	C	C	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61592282	NES17542691	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:33451517 () rs orientation: forward

Symbol	Name	Function Class
Efcab10	EF-hand calcium binding domain 10	251 bp downstream
Gm47506	predicted gene, 47506	within coordinates
Gm61262	predicted gene, 61262	within coordinates
Rr256108	regulatory region 256108	1517 bp distal
Rr260275	regulatory region 260275	1484 bp proximal
Rr267149	regulatory region 267149	1884 bp proximal