rs29145620 SNP Detail

Summary

• ID
  rs29145620
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101047819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCTGAAAATA TACCTGTTGT AATCAGAAAA AAATTTTCAG ACCAAGTCTT ACTATGTAAC
  TGCAGCTGAT CTAGGACTCT ATGTAGACCC AGGCTGGCCT CCAAGTCACC AGAAACTGCC
  TGCCTTTCAT GTTAGAAAGT AACTTTTTAC CAGTGGTAAC TTATTTGGGG TAATCTTTAT
  AATTATACTC CAAGTTAACC ATTCTTCAAT TCAAATCAAT GTTTCTACAG TCTTCAACCA
  CAGACAGGAA AATCTTGGTT TTTGTGGAAT GAGTTCTGAG TCTAGTCCAA AAAAGAGGGG
  R
  AAAAAAAAAA TCTTTGAAAT AAATTTGCAA TATTTCAGAC ATGAAACAGC TACAAATAGT
  TCTCAACTGT AAAACTGCAA ATTAATGCAA CAAGGTAACT ATACTTCTGC TCCAAAAACA
  ATTTGAAGTT TTGGCCAATA TGTATTTTCT TCCAAGAGTG AAATTCAGAG AATGCAAACC
  CTTAAGAAAG GAATATTTTA AAACGTGAAA CCGTTATTTC AAACAACCTT ATCTTTGAAC
  ACTGAAGACT GTTTCAATAG ACTTGAGGTG AAAGCAGAAG GACTTGTTCA AGTGTTAAAA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38921050	mCV23331979	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	G
ss137998136	ENSMUSSNP2084077	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29145620					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101047819 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4995	CpG island 4995	875 bp proximal
D130020L05Rik	RIKEN cDNA D130020L05 gene	891 bp upstream
Ppp4r3a	protein phosphatase 4 regulatory subunit 3A	within coordinates
Rr254052	regulatory region 254052	1419 bp distal
Rr264939	regulatory region 264939	within coordinates
Rr387703	regulatory region 387703	652 bp upstream
Tssr114723	transcription start site region 114723	1379 bp upstream
Tssr117352	transcription start site region 117352	1889 bp downstream