rs29145884 SNP Detail

Summary

• ID
  rs29145884
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:27387101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGA GATATGGCAG GATAAATCAA
  Y
  AGGAATGGAC AGTGAGAAAG AATTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38924673	mCV22640876	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss137464418	ENSMUSSNP3491335	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss323959676	CHEV_12_28021967	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29145884					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27387101 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4506	CpG island 4506	1645 bp proximal
Rr464224	regulatory region 464224	950 bp distal
Rr464225	regulatory region 464225	within coordinates
Rr464226	regulatory region 464226	692 bp proximal
Sox11	SRY (sex determining region Y)-box 11	within coordinates
Tssr113042	transcription start site region 113042	879 bp downstream
Tssr113043	transcription start site region 113043	729 bp downstream
Tssr115961	transcription start site region 115961	1958 bp upstream
Tssr115962	transcription start site region 115962	1517 bp upstream
Tssr115963	transcription start site region 115963	1038 bp upstream
Tssr115964	transcription start site region 115964	663 bp upstream
Tssr115965	transcription start site region 115965	614 bp upstream
Tssr115966	transcription start site region 115966	535 bp upstream
Tssr115967	transcription start site region 115967	265 bp upstream
Tssr115968	transcription start site region 115968	251 bp upstream
Tssr115969	transcription start site region 115969	170 bp upstream
Tssr115970	transcription start site region 115970	135 bp upstream
Tssr115971	transcription start site region 115971	79 bp upstream
Tssr115972	transcription start site region 115972	19 bp downstream
Tssr115973	transcription start site region 115973	385 bp downstream
Tssr115974	transcription start site region 115974	433 bp downstream
Tssr115975	transcription start site region 115975	473 bp downstream
Tssr115976	transcription start site region 115976	495 bp downstream
Tssr115977	transcription start site region 115977	509 bp downstream
Tssr115978	transcription start site region 115978	1141 bp downstream
Tssr115979	transcription start site region 115979	1233 bp downstream
Tssr115980	transcription start site region 115980	1400 bp downstream