rs29146275 SNP Detail

Summary

• ID
  rs29146275
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:11485688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAGC TAGTTAGGTC CTCATCCAGC
  Y
  ACTCTTGACT CTGTTCAAAA TCAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss38921677	mCV24151121	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss137130101	ENSMUSSNP4873890	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29146275					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:11485688 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4418	CpG island 4418	802 bp proximal
Rr462902	regulatory region 462902	58 bp distal
Rr462903	regulatory region 462903	within coordinates
Rr462904	regulatory region 462904	916 bp proximal
Tssr3791	transcription start site region 3791	788 bp downstream
Tssr3792	transcription start site region 3792	831 bp downstream
Tssr3793	transcription start site region 3793	1024 bp downstream
Tssr115745	transcription start site region 115745	34 bp upstream
Tssr115746	transcription start site region 115746	811 bp downstream
Tssr115747	transcription start site region 115747	863 bp downstream
Tssr115748	transcription start site region 115748	920 bp downstream
Vsnl1	visinin-like 1	within coordinates