rs29147496 SNP Detail

Summary

• ID
  rs29147496
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:112792834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCGG CCGGCGCAGG AAGCCCGAGG
  M
  CCCTGAGGCC GCCCGACCGC CCCGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38928635	mCV23888991	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
ss138728287	ENSMUSSNP4769926	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	A
ss324171474	CHEV_12_114067425	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29147496					SNP	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112792834 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdca4	cell division cycle associated 4			Intron
				mRNA-UTR
Gm52009	predicted gene, 52009			Coding-NonSynonymous
Gm56552	predicted gene, 56552			371 bp upstream
Rr387795	regulatory region 387795			within coordinates
Rr473623	regulatory region 473623			within coordinates
Rr473624	regulatory region 473624			679 bp distal
Rr473625	regulatory region 473625			165 bp proximal
Rr473626	regulatory region 473626			177 bp proximal
Rr473627	regulatory region 473627			465 bp proximal
Rr473628	regulatory region 473628			506 bp proximal
Tssr3960	transcription start site region 3960			242 bp downstream
Tssr115439	transcription start site region 115439			53 bp downstream
Tssr115440	transcription start site region 115440			446 bp upstream
Tssr115441	transcription start site region 115441			1804 bp upstream
Tssr117911	transcription start site region 117911			108 bp upstream
Tssr117912	transcription start site region 117912			137 bp downstream
Tssr117913	transcription start site region 117913			272 bp downstream