rs29147696 SNP Detail

Summary

• ID
  rs29147696
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8053005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGCACAT GGACACACAC
  ACACACAAAT AAACTAGTAA AAAAAATAAT TTAAAAAAAC TCTTATGCTT TTACCTCTCT
  CTTGTCTCTT ACCCACTTGT TCCCCCCTCC TCTCCCCCTA TTCCCTTCCC CCCCTCTCTC
  CACGTGGTCA TGGCCGGCCT CTACTTCTCT GCTCTCTCCT TCTCTTTGCT TTCTCAACTA
  Y
  TCTCTTAACT CCTCTCCCCA TACCCTGAAT AAACTCTACT ATAATAATAA TAATAATAAT
  AATAATAATA ACAGAGAAAT CAGGGACTAG AAATTCACAC TTTTCTGTAA GGTATCTTTG
  CCTTTCAGTG CATGTCCCTG CTCCTCCTTG ATAATTGGTC TGCAAGCATA AACTGTCAGT
  TCATGTTGAT TCTACTTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss38927195	mCV24183311	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss137107594	ENSMUSSNP4222457	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29147696					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8053005 () rs orientation: forward

Symbol	Name	Function Class
Apob	apolipoprotein B	within coordinates
Tssr112624	transcription start site region 112624	1152 bp downstream
Tssr112625	transcription start site region 112625	279 bp upstream
Tssr112626	transcription start site region 112626	1901 bp upstream
Tssr112627	transcription start site region 112627	1972 bp upstream