rs29147958 SNP Detail

Summary

• ID
  rs29147958
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:16425361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGG TCCTTCTAAG ACAAAGACTA
  Y
  GAATGCATCC TGAGCCAAGC ACATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss38927491	mCV22344536	ABI	CRAMUS_MOUSE	f	SNP	T	T		C
ss61574877	NES17524932	PERLEGEN	MM_PANEL2	f	SNP		T	T		T	C		C	C
ss137182966	ENSMUSSNP2146337	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323915883	CHEV_12_16382166	CHEVERUD	SCREENING_POP	f	SNP							T			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs29147958					SNP	T	T	T	C	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61574877	NES17524932	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:16425361 () rs orientation: forward

Symbol	Name	Function Class
Gm36372	predicted gene, 36372	within coordinates
Rr269311	regulatory region 269311	336 bp distal
Rr386910	regulatory region 386910	12 bp downstream