rs29149740 SNP Detail

Summary

• ID
  rs29149740
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107905247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCTGTGTACA TGTGTGTCTG TGTATATGTG TGTCTGTATC TGTGTGTGTG TCTATGTGTC
  TGCACATGTA TGCCTATCTG TATCTGTCTA TGTGTCATGT GTGTGCATTG TGTGTGCATG
  TGCATGCGTG CATATATGTG TATATATGTG TCTGTGTATA TGTGTGTCTG TATCTGTGTG
  TCTGTCTGAG TGTCTGTGTG TGTGGTGTGT GTCTGTATCT GTGTGTCTGT CTGAGTGTCT
  GTGTGTCTGT GTCTGTGTGT GTGATGTGTG CGTGTGTGTG TGTGTGTGCG TGTGTGTGTG
  Y
  GTGTGCGTGC GTGTGTGTGC GTGCGTGCGT GTGTGTGTGT GTGTGTGTGT GCACATTCAT
  GTGTCTGTGT GTACACTGCT CCATTTTCTG AAAGGGAAAG TACATTTCAG CACGTACGGA
  CGGACCTTTC TCTTACTCAT GGTACAAGCC CACAGGACTT TTCCTGGTCC ACACTAAGGA
  ACTTCTTCAT TATTTAAATA TATTCTTCCA ATGCTTGTTA CTTTTACCTC TCCCCAGGAT
  TAATTATCCA GCATCCCCTA TAAGACAGAG TATCTTAATA ATACAAAGTG CCTGAGAAGG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38930778	mCV22713272	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss138671244	ENSMUSSNP1627049	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29149740					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107905247 () rs orientation: forward

Symbol	Name	Function Class
Bcl11b	B cell leukemia/lymphoma 11B	within coordinates
Rr387761	regulatory region 387761	658 bp downstream
Tssr117636	transcription start site region 117636	326 bp upstream
Tssr117637	transcription start site region 117637	297 bp upstream
Tssr117638	transcription start site region 117638	239 bp upstream
Tssr117639	transcription start site region 117639	220 bp upstream
Tssr117640	transcription start site region 117640	204 bp upstream
Tssr117641	transcription start site region 117641	187 bp upstream
Tssr117642	transcription start site region 117642	149 bp upstream
Tssr117643	transcription start site region 117643	30 bp upstream
Tssr117644	transcription start site region 117644	71 bp downstream
Tssr117645	transcription start site region 117645	102 bp downstream
Tssr117646	transcription start site region 117646	142 bp downstream
Tssr117647	transcription start site region 117647	158 bp downstream
Tssr117648	transcription start site region 117648	218 bp downstream
Tssr117649	transcription start site region 117649	244 bp downstream
Tssr117650	transcription start site region 117650	282 bp downstream