rs29151091 SNP Detail

Summary

• ID
  rs29151091
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:29581869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATG AGGCTCCCTC GGTAGGGACC
  Y
  CTCTGCCCTG AACTTGAACT CAACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38934056	mCV22619862	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss137527432	ENSMUSSNP5439236	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss323979699	CHEV_12_30216735	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29151091					SNP	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:29581869 () rs orientation: forward

Symbol	Name	Function Class
Gm20208	predicted gene, 20208	760 bp upstream
Myt1l	myelin transcription factor 1-like	within coordinates
Rr464423	regulatory region 464423	766 bp distal
Rr464424	regulatory region 464424	661 bp distal
Rr464425	regulatory region 464425	1030 bp proximal
Tssr113063	transcription start site region 113063	1410 bp upstream
Tssr113064	transcription start site region 113064	1422 bp upstream
Tssr113065	transcription start site region 113065	1481 bp upstream
Tssr113066	transcription start site region 113066	1558 bp upstream
Tssr113067	transcription start site region 113067	1581 bp upstream
Tssr113068	transcription start site region 113068	1607 bp upstream
Tssr116026	transcription start site region 116026	727 bp upstream