rs29152821 SNP Detail

Summary

• ID
  rs29152821
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21423033 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGCAC ATGGATGGTT CGTTTGTGGA
  S
  TGTGAGATTT GGTCGAGGTC CTTTA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38940001	mCV23155904	ABI	CRAMUS_MOUSE	f	SNP		G	C					G
ss52314574	NES15371780	PERLEGEN	MM_PANEL2	r	SNP	C		G	G	G	C	C	C	C	C	C	C	C	C	C
ss137298166	ENSMUSSNP1710219	ENSEMBL	ENSEMBL_Sanger	r	SNP		C	G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29152821					SNP	G	G	C	C	C	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52314574	NES15371780	PERLEGEN	MM_PANEL	r	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21423033 () rs orientation: reverse

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	within coordinates
Cpgi4477	CpG island 4477	155 bp proximal
Gm49586	predicted gene, 49586	641 bp upstream
Rr463712	regulatory region 463712	386 bp proximal
Rr463713	regulatory region 463713	497 bp proximal
Rr463714	regulatory region 463714	511 bp proximal
Rr463715	regulatory region 463715	652 bp proximal
Rr463716	regulatory region 463716	691 bp proximal
Rr463717	regulatory region 463717	1179 bp proximal
Tssr112932	transcription start site region 112932	658 bp upstream
Tssr112933	transcription start site region 112933	1220 bp upstream
Tssr115856	transcription start site region 115856	449 bp downstream
Tssr115857	transcription start site region 115857	469 bp downstream
Tssr115858	transcription start site region 115858	494 bp downstream
Tssr115859	transcription start site region 115859	518 bp downstream
Tssr115860	transcription start site region 115860	574 bp downstream