rs29153595 SNP Detail

Summary

• ID
  rs29153595
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:82293083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGAACCTT CCACACTGGA GAGTTCTACT CCCCCCTCCT
  CCCCAGAATA AACTTTTGGT CTCTGCTTTT TCTCATTGTT TTTCCTTCTC TCTGTTCTGT
  W
  TATTTCTGCT TCTGTCATTT CTTTCTCTCT TCCTAGCTTC TGTTTAGTTT CTTGTCTTTC
  TGGTTCTATA ATTTGTATTA GCTCAGTGAC TTGGCGTTC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38938068	mCV23642061	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	A
ss137922561	ENSMUSSNP365776	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		A
ss324112458	CHEV_12_83347296	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29153595					SNP	T	A	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:82293083 () rs orientation: forward

Symbol	Name	Function Class
Rr261652	regulatory region 261652	1483 bp distal
Rr268532	regulatory region 268532	within coordinates
Rr403397	regulatory region 403397	569 bp downstream
Sipa1l1	signal-induced proliferation-associated 1 like 1	within coordinates
Tssr114221	transcription start site region 114221	1636 bp downstream
Tssr114222	transcription start site region 114222	782 bp downstream
Tssr114223	transcription start site region 114223	608 bp downstream
Tssr114224	transcription start site region 114224	564 bp downstream
Tssr114225	transcription start site region 114225	494 bp downstream
Tssr114226	transcription start site region 114226	348 bp upstream
Tssr114227	transcription start site region 114227	461 bp upstream
Tssr116943	transcription start site region 116943	901 bp upstream