rs29153749 SNP Detail

Summary

• ID
  rs29153749
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:101845457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTTAAAAGTT GATTTAGCTC CCCAGCCTTG CCCTTTTGGA AAAAAACAAC TTTAGCTTTA
  AAGAATAATA GATTTTCAAA AAGACATTTT CTTCATTAAA TAATTTTAAA ATATAGTTAG
  CAGGAACAAA GGCAACAAAA TCCAAAGACA CTCTGAAAGA CATTGAAGGG CATGTGACAT
  CTAGATACGG TGTGGTGTCC TACACTACCC AGCACCCTGC AGCAGCGACG AGTGGTGAGT
  ACTGTAGGAC TCCAACAAGC TCGGGCTTCG GATCCTGCTG CAATGCAGCT TCATTTAGCT
  S
  AAATATGTGA TACTGGGATA AATGGACCAG GTGGTGGTGG CGCACGCCTT TAATCCCAGC
  ACTCGGGAGG CAGAGGCAGG CTCATCTCTG TGTGTTGAAG GTCAGCCTGG ACTACAGAAC
  AAGTTCCAGG ACAGCCAGGG CTCCTCAGAG AAACCCTGTC TTAAGTAGAT GAAAATTCTC
  TTCACAATCT CTACAACTTG TCTATAAACC CAAAGCTATG CTAAAAGAAG TGTTCATTAG
  AAATGTTTTA AAAGGAGCCA GGTGTAAAGG TACATACATG CCTTTAATCC AGTAGAGGCT
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38941744	mCV22298705	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29153749					SNP	G	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101845457 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Trip11	thyroid hormone receptor interactor 11			Intron
				Noncoding-Transcript-Variant
Tssr117378	transcription start site region 117378			1340 bp downstream