rs29153765 SNP Detail

Summary

• ID
  rs29153765
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53631806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATTAGGG TTGAGGAATA
  TTTTGGTAAA ACAACTTTCA TAAAAGTTGA GCTTTCGTTC CAGGATTTGT GAAATAGAAC
  AAAGCAATTC ATTCTGAAGT TTAACTCCAG ATTATATTAA TTAATGTTTC ATCTCGAGGT
  CTTGAGAAAA CTCCTAGGCC ATTTTCCACC TGAAATCAGT TTAATTTCTA GTCCAAAATT
  Y
  AGCCACTTGG TGATTATTTG CAAATCCAAA GTCATGCTTA TGATTTTTGA AACATATCAA
  GCAGGTACTT CCTGGTATAT TTTTAATCAC AATTAAAAAG AACATGGAAG ATGCTTTGAA
  ATTGATAATT GGAAGTGAGA TTGGTAGCAA ATGAACCCAG GTTTCATGGC CTTTAAGAAT
  ATGAGTACCA TGGGCTAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38943335	mCV22367585	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss47088626	NES11251041	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		T	T	T	T	C	T	T	C	T
ss137756574	ENSMUSSNP1630204	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29153765					SNP	C	C	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47088626	NES11251041	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53631806 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr256680	regulatory region 256680	195 bp proximal
Rr267627	regulatory region 267627	1596 bp proximal