rs29154299 SNP Detail

Summary

• ID
  rs29154299
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8061323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACA CTGGCTTCCA GCCATGTGAT
  Y
  CCCACAGCAA TAAGCACCCC AAGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38940353	mCV24183295	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss137107636	ENSMUSSNP6242290	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29154299					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8061323 () rs orientation: forward

Symbol	Name	Function Class
Apob	apolipoprotein B	within coordinates
Tssr112656	transcription start site region 112656	1988 bp downstream
Tssr112657	transcription start site region 112657	1974 bp downstream
Tssr112658	transcription start site region 112658	1941 bp downstream
Tssr112659	transcription start site region 112659	1862 bp downstream
Tssr112660	transcription start site region 112660	1738 bp downstream
Tssr112661	transcription start site region 112661	1503 bp downstream
Tssr112662	transcription start site region 112662	1262 bp downstream
Tssr112663	transcription start site region 112663	1021 bp downstream
Tssr112664	transcription start site region 112664	997 bp downstream
Tssr112665	transcription start site region 112665	842 bp downstream
Tssr112666	transcription start site region 112666	822 bp downstream
Tssr112667	transcription start site region 112667	773 bp downstream
Tssr112668	transcription start site region 112668	637 bp downstream
Tssr112669	transcription start site region 112669	550 bp downstream
Tssr112670	transcription start site region 112670	494 bp downstream
Tssr112671	transcription start site region 112671	391 bp downstream
Tssr112672	transcription start site region 112672	179 bp upstream
Tssr112673	transcription start site region 112673	222 bp upstream
Tssr112674	transcription start site region 112674	323 bp upstream
Tssr112675	transcription start site region 112675	350 bp upstream
Tssr112676	transcription start site region 112676	453 bp upstream
Tssr112677	transcription start site region 112677	603 bp upstream
Tssr112678	transcription start site region 112678	727 bp upstream
Tssr112679	transcription start site region 112679	752 bp upstream
Tssr112680	transcription start site region 112680	771 bp upstream
Tssr112681	transcription start site region 112681	818 bp upstream
Tssr112682	transcription start site region 112682	831 bp upstream
Tssr112683	transcription start site region 112683	868 bp upstream
Tssr112684	transcription start site region 112684	912 bp upstream
Tssr112685	transcription start site region 112685	960 bp upstream
Tssr112686	transcription start site region 112686	1008 bp upstream
Tssr112687	transcription start site region 112687	1088 bp upstream
Tssr112688	transcription start site region 112688	1189 bp upstream
Tssr112689	transcription start site region 112689	1231 bp upstream
Tssr112690	transcription start site region 112690	1256 bp upstream
Tssr112691	transcription start site region 112691	1307 bp upstream
Tssr112692	transcription start site region 112692	1343 bp upstream
Tssr112693	transcription start site region 112693	1362 bp upstream
Tssr112694	transcription start site region 112694	1500 bp upstream
Tssr112695	transcription start site region 112695	1719 bp upstream