rs29154639 SNP Detail

Summary

• ID
  rs29154639
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112977276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG AAAGGCAATT GTGTAAAGCC
  R
  TGGATACAAA GAAACAAGAC ATGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38940792	mCV23887945	ABI	CRAMUS_MOUSE	f	SNP		G	A					G		G
ss61722772	NES17660109	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	A		G	G	A	A		G	G	A	A		A
ss138730659	ENSMUSSNP5300461	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							G
ss324172771	CHEV_12_114251867	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29154639					SNP	G	G	A	G	G	G	A	G	G	G	A	A	A	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61722772	NES17660109	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112977276 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5198	CpG island 5198	128 bp proximal
Gm61130	predicted gene, 61130	within coordinates
Pacs2	phosphofurin acidic cluster sorting protein 2	852 bp upstream
Tssr115451	transcription start site region 115451	729 bp upstream
Tssr115452	transcription start site region 115452	846 bp upstream
Tssr115453	transcription start site region 115453	859 bp upstream
Tssr115454	transcription start site region 115454	890 bp upstream
Tssr115455	transcription start site region 115455	903 bp upstream
Tssr117933	transcription start site region 117933	568 bp downstream