rs29154993 SNP Detail

Summary

• ID
  rs29154993
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:31886575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATCAGAAA TAAAATAAAT
  TAGGGGCAGG GTCACCTGGG TCTCCTTGCA GACTCCGGGT CTTGGGGGCC CTTACTTAGC
  ATTACAATAG ATAGCAAGAC CAAACCTCAA CAGGAGGTTT ATTCTCTAAG GAAAAAGAAG
  GGAGTGGAAA GGTTGCTGAA GGGATTGTAA GCAGGAGCTA GGAAGAGACA GGCAGTTAAT
  M
  CTAGGAGTAA AACACTTCTT AGTAGTGCTG AAAGGCCTTT ACTAGTAACT AAAAGAACAG
  TATAAGATCT AGTCATTGCC TGCTAAATAG GAGCCTGCAG AGATGGTTAG CATCAGCGAA
  TGGCAAAGAA GAGTTTAGTA AAGCAATTCC ACTTGAGGAC ATGTATGCTG TTACAGGACT
  GTCACAAATA CTTCTTTCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38948752	mCV24461542	ABI	CRAMUS_MOUSE	f	SNP		A	A					C		C
ss50964969	NES14421229	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		C	C	C	C	C	C	C	A
ss137570397	ENSMUSSNP4982593	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29154993					SNP	A	A	A	A	A	A	A	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50964969	NES14421229	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:31886575 () rs orientation: forward

Symbol	Name	Function Class
Cog5	component of oligomeric golgi complex 5	within coordinates
Rr387038	regulatory region 387038	within coordinates