rs29155285 SNP Detail

Summary

• ID
  rs29155285
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:29583784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTTACACA CTATGACAGG ATGGCATGAT TCAGGGTACA
  GAGGGCCAGC GATGGAACCC TCTCGGCTAC AGCTGCCCCT CAGATGAACA TGCCTATGGG
  Y
  TGCTTGTCTG CAATCTCCCA GAGTTGTTCT CATCAGGAGT CTGGATAGTC AAAGCTAGCT
  TCCAGGACAG GGGAGGTACC TTGATGATTT AGTGTGCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38942220	mCV22619851	ABI	CRAMUS_MOUSE	f	SNP	T	C						T
ss61585708	NES17530505	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	C	C	T	C	C	C		C	C	T	C		C
ss137527435	ENSMUSSNP1209455	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
ss323979702	CHEV_12_30218650	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29155285					SNP	T	C	T	C	C	C	T	T	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61585708	NES17530505	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:29583784 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4517	CpG island 4517	964 bp proximal
Myt1l	myelin transcription factor 1-like	within coordinates
Tssr113063	transcription start site region 113063	494 bp downstream
Tssr113064	transcription start site region 113064	470 bp downstream
Tssr113065	transcription start site region 113065	421 bp downstream
Tssr113066	transcription start site region 113066	339 bp downstream
Tssr113067	transcription start site region 113067	318 bp downstream
Tssr113068	transcription start site region 113068	293 bp downstream
Tssr113069	transcription start site region 113069	776 bp upstream
Tssr113070	transcription start site region 113070	931 bp upstream
Tssr113071	transcription start site region 113071	1062 bp upstream
Tssr113072	transcription start site region 113072	1396 bp upstream
Tssr113073	transcription start site region 113073	1424 bp upstream