rs29155630 SNP Detail

Summary

• ID
  rs29155630
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101048183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATA CGCTTAAACA ATCAGAAAAG
  S
  TTGCAATAAA ATGTTCCAAA GGTTC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38946770	mCV23331977	ABI	CRAMUS_MOUSE	f	SNP		G	C				C		G
ss47239346	NES11408766	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G		C	G	G	G		C	G	G	C		G
ss137998138	ENSMUSSNP6537669	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C						G
ss324139380	CHEV_12_102320134	CHEVERUD	SCREENING_POP	f	SNP												C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29155630					SNP	G	G	C	G	G	G	C	C	G	G	G	C	C	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47239346	NES11408766	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101048183 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4995	CpG island 4995	511 bp proximal
D130020L05Rik	RIKEN cDNA D130020L05 gene	527 bp upstream
Ppp4r3a	protein phosphatase 4 regulatory subunit 3A	within coordinates
Rr254052	regulatory region 254052	1783 bp distal
Rr264939	regulatory region 264939	within coordinates
Rr387703	regulatory region 387703	288 bp upstream
Tssr114723	transcription start site region 114723	1015 bp upstream
Tssr114724	transcription start site region 114724	1788 bp upstream
Tssr114725	transcription start site region 114725	1832 bp upstream
Tssr114726	transcription start site region 114726	1882 bp upstream
Tssr117352	transcription start site region 117352	1525 bp downstream
Tssr117353	transcription start site region 117353	1651 bp downstream
Tssr117354	transcription start site region 117354	1729 bp downstream