rs29157862 SNP Detail

Summary

• ID
  rs29157862
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:27385164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACTCTGACAA ACAGGCTAAC CTACCCCTCT ATACTTTGCC TATGCTTTTT ATTTACTCTA
  TTGGCCAGTT AAAAATACCA AGACACGATC ACCATGCTTA TTCCACTGTG GGCAGCTCGC
  AGCCTGCCCT AAGCATCACT TCCTGAGGGC CCCAGTCCTG CCCAAGCTGT GGGTCCTGGT
  TGGATGCTGA GACACCAAGA CTTTTCAAAT CTCTCAGCTT CGAGACAACA CTTTAGGAGT
  CACACAGTAG TTACCCAATG CAAAGTGGGA AAGATAAACA AAAAACAAAA CAAAACAAAA
  M
  AAAAAAAAAA ATCAAAAACA AAACAAAAAA GTCACATAAA AGCCACATGT GGAGATTGAT
  CACACGATTT TTATTGGTCT TTTGAACAAA TGTATTCCTC TGTGAAAAAC TCCTGCAAAA
  AGAGACATTG GAGTGTATGA ATTCAACCCT GAGCATTAAC ACTGCATTCC AAGGAGGGCG
  GTCACGAAGC TGGTTTGATT GAAGCACAAA GCACAAGCCA CTGATACTCT CTTGTGTGAT
  CAGGTTTTTA CAAAAAAATA CATAGTTTTC AATAAATAAT GCTTAATTTT ACAACTTTGA
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38944497	mCV22641561	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C	A
ss137464394	ENSMUSSNP1655112	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29157862					SNP	A	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27385164 () rs orientation: forward

Symbol	Name	Function Class
Rr464223	regulatory region 464223	1178 bp distal
Rr464224	regulatory region 464224	88 bp proximal
Rr464225	regulatory region 464225	1747 bp proximal
Sox11	SRY (sex determining region Y)-box 11	within coordinates
Tssr113042	transcription start site region 113042	1048 bp upstream
Tssr113043	transcription start site region 113043	1204 bp upstream
Tssr115960	transcription start site region 115960	386 bp upstream
Tssr115961	transcription start site region 115961	21 bp upstream
Tssr115962	transcription start site region 115962	409 bp downstream
Tssr115963	transcription start site region 115963	888 bp downstream
Tssr115964	transcription start site region 115964	1239 bp downstream
Tssr115965	transcription start site region 115965	1302 bp downstream
Tssr115966	transcription start site region 115966	1391 bp downstream
Tssr115967	transcription start site region 115967	1663 bp downstream
Tssr115968	transcription start site region 115968	1677 bp downstream
Tssr115969	transcription start site region 115969	1754 bp downstream
Tssr115970	transcription start site region 115970	1779 bp downstream
Tssr115971	transcription start site region 115971	1822 bp downstream
Tssr115972	transcription start site region 115972	1956 bp downstream