rs29157947 SNP Detail

Summary

• ID
  rs29157947
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:46867620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTAA ACCTTTTCCT GACTCCCTGT
  M
  TAGGAAGCAT GGGGATTTTG GTTGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss38947894	mCV24792169	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
ss137691503	ENSMUSSNP5626299	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29157947					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:46867620 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4580	CpG island 4580	825 bp distal
Gm60470	predicted gene, 60470	within coordinates
Nova1	NOVA alternative splicing regulator 1	1477 bp upstream
Rr465708	regulatory region 465708	1919 bp distal
Rr465710	regulatory region 465710	1418 bp distal
Rr465711	regulatory region 465711	200 bp distal
Tssr116219	transcription start site region 116219	1900 bp upstream
Tssr116220	transcription start site region 116220	1833 bp upstream
Tssr116221	transcription start site region 116221	1811 bp upstream
Tssr116222	transcription start site region 116222	1779 bp upstream
Tssr116223	transcription start site region 116223	1741 bp upstream
Tssr116224	transcription start site region 116224	1633 bp upstream
Tssr116225	transcription start site region 116225	1588 bp upstream
Tssr116226	transcription start site region 116226	1466 bp upstream
Tssr116227	transcription start site region 116227	1339 bp upstream
Tssr116228	transcription start site region 116228	1320 bp upstream