rs29158169 SNP Detail

Summary

• ID
  rs29158169
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52655990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTTCTCC TTTGAATTGG
  CTGTAGCATA TGTTTTTATT GTTTTCTACA TTACCTAAAA TCTCTGATAC ACGATACACG
  TTTCTCTTTT TAATCCACAG AAGAGGCATG GTTTTAATTA AAAAATAGTT TTATATAAGT
  TTGGAGTTCT TCCACTGAGT TTCCCAGTGG ACTCACCTAA CAAAGCTAAG TATATTTATA
  R
  TCCGAGAAAG TACAGTTTAT GGTCTAATTA AAGCTCAGAT ACATTTTTCT TCATTTTTTC
  ATGACAATAG AAATTTGATG ACTTTTTCTT ATTGAAGTAC TCTCTGTTAA TTTTATAGTT
  TCTTTGTCTT TCCACAGATG ATTCAGTGCT AACCTTCGAT AGCAATAGTT GGGAATTTGG
  TGTGAAGATT TATTGAATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38945911	mCV22548489	ABI	CRAMUS_MOUSE	f	SNP	A	G					G		G
ss52423899	NES15398978	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G		A	G	G	G	G	G	G	A	G
ss137738462	ENSMUSSNP3540104	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G							G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29158169					SNP	A	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52423899	NES15398978	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52655990 () rs orientation: forward

Symbol	Name	Function Class
Gm35239	predicted gene, 35239	within coordinates
Tssr113445	transcription start site region 113445	1564 bp downstream