rs29160298 SNP Detail

Summary

• ID
  rs29160298
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110664328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACAGCTG TCCATAACTC
  CAATATCTGA CACCTTCACA CAAACATACA TGTAGGCAAA ACACCAATAC ACATAAAATA
  ATAAATAAAA GCTTAGAAAG AAAAGAAGCC GGGAAAGAGG AAGCCAGGCA GTGGTGGCAT
  AAGCCTTTTT AATCCAAGCA CTCGGGAGGG AGTCAGAGGC AGGTGGATTT CTGAGTTTGA
  Y
  GACAGCCTGG TCTACAGGGT GAGTTCCAGG ACAACCAGGG AAACCCTGTC TGGGGGAGTT
  GGGGGGAAGA AAGAAGAAAG AATGTGCTCT GTGGACAAAA ACACAGCAGG CAATTTCCTC
  TGGGAGAGGA AGAAAGTCAC CCATCTCCAT CTCGCCCTCC CTCCAGGGAA CGAGGCCCTT
  TCCCAGCAGC TGAGGAAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38957152	mCV24498024	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	T
ss138692755	ENSMUSSNP1817855	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29160298					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110664328 () rs orientation: forward

Symbol	Name	Function Class
4932703K07Rik	RIKEN cDNA 4932703K07 gene	778 bp downstream
Cpgi5120	CpG island 5120	753 bp distal
Gm60092	predicted gene, 60092	1171 bp upstream
Hsp90aa1	heat shock protein 90, alpha (cytosolic), class A member 1	1499 bp upstream
Rr403501	regulatory region 403501	1292 bp downstream
Rr472969	regulatory region 472969	1009 bp distal
Rr472970	regulatory region 472970	681 bp proximal
Rr472971	regulatory region 472971	1182 bp proximal
Rr472972	regulatory region 472972	1819 bp proximal
Tssr115230	transcription start site region 115230	1980 bp downstream
Tssr115231	transcription start site region 115231	1944 bp downstream
Tssr115232	transcription start site region 115232	1259 bp downstream
Tssr115233	transcription start site region 115233	1160 bp upstream
Tssr117789	transcription start site region 117789	1632 bp upstream
Tssr117790	transcription start site region 117790	1575 bp upstream
Tssr117791	transcription start site region 117791	1476 bp upstream
Tssr117792	transcription start site region 117792	1447 bp upstream