rs29160577 SNP Detail

Summary

• ID
  rs29160577
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101050645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCACAATGTT GCTCTGACTG GCTGAAGCAA CGTATGCGAG
  AAGCTGGGAT CTTTCTTAAC CCACACCAGA GACAAGTGCT CGCAAAGACA TACCTGAAAT
  S
  ATTCACCAAC AAAACTCGGA AGCATGTAAA AACAAAGCAG TTGCTGTTTC TAAATACCAG
  AATGCAATCC TTTCAAGCAT CTAGATGGAG CCCATGAGC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38953208	mCV24527968	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	G
ss137998150	ENSMUSSNP4555721	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29160577					SNP	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101050645 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4995	CpG island 4995	148 bp distal
D130020L05Rik	RIKEN cDNA D130020L05 gene	within coordinates
Ppp4r3a	protein phosphatase 4 regulatory subunit 3A	684 bp upstream
Rr387703	regulatory region 387703	within coordinates
Tssr114723	transcription start site region 114723	1413 bp downstream
Tssr114724	transcription start site region 114724	643 bp downstream
Tssr114725	transcription start site region 114725	584 bp downstream
Tssr114726	transcription start site region 114726	554 bp downstream
Tssr117352	transcription start site region 117352	899 bp upstream
Tssr117353	transcription start site region 117353	775 bp upstream
Tssr117354	transcription start site region 117354	669 bp upstream