rs29160627 SNP Detail

Summary

• ID
  rs29160627
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:32111517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCGCCCG GCGCCCCGCC
  TCCGCCCGCG CGCCCACGTG ATCCCCGGAA ACCATGGCAA CCCGGCGGGC GGGAGCACTG
  CCGCCTCTCA AGTGGCCCCA GGGTGGAGGC AGCCTGAGCC TGGGGCGTGG GGCTGAGGCC
  GCGCGCTCCA CCTGAGCTCC CTGAGCGAAT CCCACGCACC TTTCTCCCTG TCCCACGCAG
  W
  GTTGGTGCGG CGCAATTCCT GCTGAAACTT CAGCCTCCAC CTTGGTGGCT TTTCCTTTTC
  CTAGAATCCA ACCCCAAGAG AAACGTGCGT GGTGTCTTTT GTTAGTCGCA CAGCCCTACT
  GGTTCTCTTC TGGATAAAAG AGATGCTGCC ACTTGTCTGT CACAAAATTT TCTTTAATTC
  CGCCTTTTAG CCTCGTGGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss38955418	mCV22596106	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
ss137572530	ENSMUSSNP2188117	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs29160627					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:32111517 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4539	CpG island 4539	within coordinates
Gm51992	predicted gene, 51992	701 bp downstream
Gm60244	predicted gene, 60244	1203 bp upstream
Prkar2b	protein kinase, cAMP dependent regulatory, type II beta	222 bp upstream
Tssr113126	transcription start site region 113126	1528 bp downstream
Tssr116073	transcription start site region 116073	567 bp upstream
Tssr116074	transcription start site region 116074	310 bp upstream
Tssr116075	transcription start site region 116075	217 bp upstream
Tssr116076	transcription start site region 116076	201 bp upstream