rs29160725 SNP Detail

Summary

• ID
  rs29160725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:108145994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACGGGCCGCA GTCCACAAGG CCGCAGGGTA GGCGGAGCGG
  CGACTGTTGA CTTGTTACTT TTTTTCTTTT TTTTAGCTTT ACTTTCTTCT AATTGGTTGA
  Y
  AGGCACCTGA CTTTCGCCGC CCCCTCCGGC CGCTTCTTAA CGTCCCGAGA CGCAGGGAAA
  TGACGTAGTT CCCCGACATT CCACCTCCAA GATGGCTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss38953404	mCV24506029	ABI	CRAMUS_MOUSE	f	SNP	C		C	T
ss138673166	ENSMUSSNP6836937	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29160725					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:108145994 () rs orientation: forward

Symbol	Name	Function Class
Ccnk	cyclin K	within coordinates
Cpgi5076	CpG island 5076	within coordinates
Rr403488	regulatory region 403488	105 bp downstream
Rr472439	regulatory region 472439	530 bp distal
Rr472440	regulatory region 472440	within coordinates
Rr472441	regulatory region 472441	14 bp proximal
Rr472442	regulatory region 472442	168 bp proximal
Setd3	SET domain containing 3	421 bp upstream
Tssr114948	transcription start site region 114948	1238 bp downstream
Tssr114949	transcription start site region 114949	875 bp downstream
Tssr114950	transcription start site region 114950	601 bp downstream
Tssr114951	transcription start site region 114951	566 bp downstream
Tssr114952	transcription start site region 114952	153 bp downstream
Tssr114953	transcription start site region 114953	58 bp upstream
Tssr114954	transcription start site region 114954	173 bp upstream
Tssr117676	transcription start site region 117676	510 bp upstream
Tssr117677	transcription start site region 117677	396 bp upstream