rs29160848 SNP Detail

Summary

• ID
  rs29160848
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112794664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGATCTTA GGTTCGAGGC
  TTGGTGCTAA ACTCCTGCTG AACCCCCTCA GCTCCATTTT CATTTCTTTC ATCTCCTTTT
  TGGGTACTGG CTAAAAGCCT AAGGCACAGT TTCCCTGAGA CACAGTTTTC CTGAGGTTCT
  GTGCTTTCTG GTTTTTTTTT TTTTTTTTTT TTTTTTTACC TCCTTGCCCG ACTTAAAAGA
  Y
  AGTTTTCTCA TCTCCTCTTG GAGGCCACAG GTTTTTCAGC TTGTTTATCC TGTCTTTTTT
  TTTTCCCCTC TAAGTTTAAT AAAATTGTTT ATGACCTTCT TTCTGAAACA GTTTTAAATT
  ATTTTATTAG TAAGGCTAAG AATCCAAAGG AAACTGTACT AGTCAGGTTC TCTAGAATCA
  CAGAACTTAT GGGTTGCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss38960373	mCV23888982	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss138728332	ENSMUSSNP5591558	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29160848					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112794664 () rs orientation: forward

Symbol	Name	Function Class
Cdca4	cell division cycle associated 4	1621 bp upstream
Cpgi5185	CpG island 5185	885 bp distal
Gm52009	predicted gene, 52009	768 bp downstream
Gm56552	predicted gene, 56552	within coordinates
Rr265126	regulatory region 265126	63 bp distal
Rr387795	regulatory region 387795	716 bp downstream
Tssr3960	transcription start site region 3960	1565 bp upstream
Tssr115439	transcription start site region 115439	1883 bp downstream
Tssr115440	transcription start site region 115440	1359 bp downstream
Tssr115441	transcription start site region 115441	21 bp downstream
Tssr117911	transcription start site region 117911	1938 bp upstream
Tssr117912	transcription start site region 117912	1618 bp upstream
Tssr117913	transcription start site region 117913	1540 bp upstream