rs29161258 SNP Detail

Summary

• ID
  rs29161258
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:108144593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATG GCTGTCAACA TCCTGTTCAA
  R
  TGTGTTTACT TCGGTAACAA CACCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38957398	mCV25195834	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	G
ss138673145	ENSMUSSNP4437648	ENSEMBL	ENSEMBL_Sanger	f	SNP		A			G
ss324152845	CHEV_12_109416544	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29161258					SNP	A	A	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:108144593 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccnk	cyclin K			1245 bp upstream
Cpgi5076	CpG island 5076			within coordinates
Rr403488	regulatory region 403488			995 bp upstream
Rr472438	regulatory region 472438			1757 bp distal
Rr472439	regulatory region 472439			within coordinates
Rr472440	regulatory region 472440			872 bp proximal
Rr472441	regulatory region 472441			1415 bp proximal
Rr472442	regulatory region 472442			1569 bp proximal
Setd3	SET domain containing 3			Intron
				Noncoding-Transcript-Variant
Tssr114948	transcription start site region 114948			149 bp upstream
Tssr114949	transcription start site region 114949			517 bp upstream
Tssr114950	transcription start site region 114950			799 bp upstream
Tssr114951	transcription start site region 114951			802 bp upstream
Tssr114952	transcription start site region 114952			1209 bp upstream
Tssr114953	transcription start site region 114953			1459 bp upstream
Tssr114954	transcription start site region 114954			1574 bp upstream
Tssr117676	transcription start site region 117676			876 bp downstream
Tssr117677	transcription start site region 117677			903 bp downstream