rs29161634 SNP Detail

Summary

• ID
  rs29161634
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:111506518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAG TTTTTGTATA TTCACGTGCA
  W
  CCAGTGCTTT AGTTAACTAT AATGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38955624	mCV24937679	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss138696539	ENSMUSSNP3940302	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
ss324159949	CHEV_12_112778295	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29161634					SNP	A	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:111506518 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5150	CpG island 5150	713 bp distal
Eif5	eukaryotic translation initiation factor 5	within coordinates
Gm56546	predicted gene, 56546	1849 bp upstream
Gm58608	predicted gene, 58608	397 bp downstream
Gm60631	predicted gene, 60631	1450 bp upstream
Rr403512	regulatory region 403512	1956 bp downstream
Rr473213	regulatory region 473213	1292 bp distal
Rr473214	regulatory region 473214	1332 bp distal
Rr473215	regulatory region 473215	630 bp distal
Snora28	small nucleolar RNA, H/ACA box 28	862 bp upstream
Tssr115320	transcription start site region 115320	1841 bp downstream
Tssr115321	transcription start site region 115321	1806 bp downstream
Tssr115322	transcription start site region 115322	1709 bp downstream
Tssr115323	transcription start site region 115323	1602 bp downstream
Tssr115324	transcription start site region 115324	1280 bp downstream
Tssr115325	transcription start site region 115325	1210 bp downstream
Tssr115326	transcription start site region 115326	637 bp downstream
Tssr115327	transcription start site region 115327	129 bp upstream
Tssr117829	transcription start site region 117829	1478 bp upstream