rs29162000 SNP Detail

Summary

• ID
  rs29162000
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:73953281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCATG CTAGACCACT CCTCTACTAC
  Y
  GAGCTAAATC TCCAGCTGTA ATCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss38958638	mCV24197686	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss137890802	ENSMUSSNP1637669	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss324099222	CHEV_12_75007494	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs29162000					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:73953281 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4761	CpG island 4761	840 bp proximal
Hif1a	hypoxia inducible factor 1, alpha subunit	Intron
Rr467870	regulatory region 467870	1119 bp distal
Rr467871	regulatory region 467871	907 bp proximal
Rr467872	regulatory region 467872	1408 bp proximal
Rr467873	regulatory region 467873	1463 bp proximal
Tssr113838	transcription start site region 113838	1452 bp upstream
Tssr113839	transcription start site region 113839	1467 bp upstream
Tssr113840	transcription start site region 113840	1548 bp upstream
Tssr113841	transcription start site region 113841	1653 bp upstream
Tssr113842	transcription start site region 113842	1678 bp upstream
Tssr113843	transcription start site region 113843	1868 bp upstream