rs29162044 SNP Detail

Summary

• ID
  rs29162044
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:27387310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTCGGACAC ATGTAAGGCT CAGTCCTGTC GTGCTTGCAG
  GCCACAGGCT ATACAAAGGG TATCTGAAAC TGACATTCCT AATGAAGTTT TTTTTTTTTT
  W
  TATATAAAAT TTGGCCCTTA GAATAACTGA GAAATATCCT GAAAAACCTT CCCTGAAACT
  GTAATAAACA AAGTTTCTTT ATCTACTGAT AAAATCGAC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38954069	mCV22640875	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
ss137464421	ENSMUSSNP4137216	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss323959677	CHEV_12_28022176	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29162044					SNP	T	T	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27387310 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4506	CpG island 4506	1436 bp proximal
Rr464224	regulatory region 464224	1159 bp distal
Rr464225	regulatory region 464225	16 bp distal
Rr464226	regulatory region 464226	483 bp proximal
Sox11	SRY (sex determining region Y)-box 11	within coordinates
Tssr113042	transcription start site region 113042	1088 bp downstream
Tssr113043	transcription start site region 113043	938 bp downstream
Tssr115962	transcription start site region 115962	1726 bp upstream
Tssr115963	transcription start site region 115963	1247 bp upstream
Tssr115964	transcription start site region 115964	872 bp upstream
Tssr115965	transcription start site region 115965	823 bp upstream
Tssr115966	transcription start site region 115966	744 bp upstream
Tssr115967	transcription start site region 115967	474 bp upstream
Tssr115968	transcription start site region 115968	460 bp upstream
Tssr115969	transcription start site region 115969	379 bp upstream
Tssr115970	transcription start site region 115970	344 bp upstream
Tssr115971	transcription start site region 115971	288 bp upstream
Tssr115972	transcription start site region 115972	175 bp upstream
Tssr115973	transcription start site region 115973	176 bp downstream
Tssr115974	transcription start site region 115974	224 bp downstream
Tssr115975	transcription start site region 115975	264 bp downstream
Tssr115976	transcription start site region 115976	286 bp downstream
Tssr115977	transcription start site region 115977	300 bp downstream
Tssr115978	transcription start site region 115978	932 bp downstream
Tssr115979	transcription start site region 115979	1024 bp downstream
Tssr115980	transcription start site region 115980	1191 bp downstream
Tssr115981	transcription start site region 115981	1872 bp downstream