rs29162115 SNP Detail

Summary

• ID
  rs29162115
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:82291773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAGG GGTGGGGGTA GAAAATGTCC
  Y
  AGAGTTTAGA TAAGGATTGG ATTAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss38955870	mCV23642059	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss137922558	ENSMUSSNP2507674	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss324112457	CHEV_12_83345986	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29162115					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:82291773 () rs orientation: forward

Symbol	Name	Function Class
Rr261652	regulatory region 261652	173 bp distal
Rr268532	regulatory region 268532	28 bp proximal
Rr403397	regulatory region 403397	441 bp upstream
Sipa1l1	signal-induced proliferation-associated 1 like 1	within coordinates
Tssr114221	transcription start site region 114221	326 bp downstream
Tssr114222	transcription start site region 114222	519 bp upstream
Tssr114223	transcription start site region 114223	686 bp upstream
Tssr114224	transcription start site region 114224	731 bp upstream
Tssr114225	transcription start site region 114225	807 bp upstream
Tssr114226	transcription start site region 114226	1658 bp upstream
Tssr114227	transcription start site region 114227	1771 bp upstream
Tssr116943	transcription start site region 116943	399 bp downstream