rs29162250 SNP Detail

Summary

• ID
  rs29162250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:61648852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCTACAGG ATTGTCATCC CTTTCAGCTC CTTCAATCCT
  ATCCCTGATG GTTGACTATG AGTGTCAACA TCTGTCTCAA TCAGCTGCTG GTAGAACCTC
  Y
  GAGAGGACAG ACATGCAAGG CTCCTGTCTC GGGGAGTTTT TGTTCAGAAA TTTGGACTTC
  CATAACTACA AGTTCTTAAA ATAACATTTG TACAGAAAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38957634	mCV22338405	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss137815002	ENSMUSSNP4405069	ENSEMBL	ENSEMBL_Sanger	f	SNP				T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29162250					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:61648852 () rs orientation: forward

Symbol	Name	Function Class
Lrfn5	leucine rich repeat and fibronectin type III domain containing 5	within coordinates
Tssr113582	transcription start site region 113582	1814 bp upstream